Gene Variant Detail

Contact

Missing content? – Request curation!

Request curation for specific Genes, Variants, or PubMed publications.

Have questions, comments, or suggestions? - Let us know!

Email us at : ckbsupport@genomenon.com

Gene TET2
Variant R1896S
Impact List missense
Protein Effect loss of function
Gene Variant Descriptions TET2 R1896S lies within the catalytic domain of the Tet2 protein (PMID: 24315485). R1896S confers a loss of function to the Tet2 protein as demonstrated by decreased Tet2 methylcytosine dioxygenase activity (PMID: 24697267) and decreased induction of CXCL10 and PD-L1 expression via IFN-gamma in cultured cells (PMID: 31310587).
Associated Drug Resistance
Category Variants Paths

TET2 mutant TET2 inact mut TET2 R1896S

Filtering

  • Case insensitive filtering will display rows if any text in any cell matches the filter term
  • Use simple literal full or partial string matches
  • Separate multiple filter terms with a space. Any order may be used (i. e. a b c and c b a are equivalent )
  • Filtering will only apply to rows that are already loaded on the page. Filtering has no impact on query parameters.
  • Use quotes to match on a longer phrase with spaces (i.e. "mtor c1483f")

Sorting

  • Generally, the default sort order for tables is set to be first column ascending; however, specific tables may set a different default sort order.
  • Click on any column header arrows to sort by that column
  • Hold down the Shift key and click multiple columns to sort by more than one column. Be sure to set ascending or descending order for a given column before moving on to the next column.

Transcript NM_001127208.3
gDNA chr4:g.105276198G>C
cDNA c.5688G>C
Protein p.R1896S
Source Database RefSeq
Genome Build GRCh38/hg38
Transcript gDNA cDNA Protein Source Database Genome Build
XM_024454102.1 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_005263082.3 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_024454103.2 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_024454103.1 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
NM_001127208.2 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_005263082 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
NM_001127208 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_024454102.2 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
NM_001127208.3 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38
XM_005263082.4 chr4:g.105276198G>C c.5688G>C p.R1896S RefSeq GRCh38/hg38

Filtering

  • Case insensitive filtering will display rows if any text in any cell matches the filter term
  • Use simple literal full or partial string matches
  • Separate multiple filter terms with a space. Any order may be used (i. e. a b c and c b a are equivalent )
  • Filtering will only apply to rows that are already loaded on the page. Filtering has no impact on query parameters.
  • Use quotes to match on a longer phrase with spaces (i.e. "mtor c1483f")

Sorting

  • Generally, the default sort order for tables is set to be first column ascending; however, specific tables may set a different default sort order.
  • Click on any column header arrows to sort by that column
  • Hold down the Shift key and click multiple columns to sort by more than one column. Be sure to set ascending or descending order for a given column before moving on to the next column.

Molecular Profile Protein Effect Treatment Approaches
TET2 R1896S loss of function