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Gene CTNNB1
Variant T42_K49del
Impact List deletion
Protein Effect unknown
Gene Variant Descriptions CTNNB1 T42_K49del results in the deletion of eight amino acids of the Ctnnb1 protein from amino acids 42 to 49 (UniProt.org). T42_K49del has not been characterized in the scientific literature and therefore, its effect on Ctnnb1 protein function is unknown (PubMed, Jul 2024).
Associated Drug Resistance
Category Variants Paths

CTNNB1 mutant CTNNB1 T42_K49del

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Transcript NM_001098210.2
gDNA chr3:g.41224636_41224659del24
cDNA c.124_147del24
Protein p.T42_K49delTAPSLSGK
Source Database RefSeq
Genome Build GRCh38/hg38
Transcript gDNA cDNA Protein Source Database Genome Build
NM_001098210.2 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_017005738.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
XM_024453356.2 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_024453356.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
XM_047447477.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_047447483.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
NM_001098209.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
NM_001098210.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
XM_047447479.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
NM_001904.3 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
XM_006712985.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
XM_047447481.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_047447482.1 chr3:g.41224657_41224680del24 c.124_147del24 p.K42_D49delKGNPEEED RefSeq GRCh38/hg38
XM_006712985.2 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_024453358.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38
NM_001330729.2 chr3:g.41224657_41224680del24 c.124_147del24 p.K42_D49delKGNPEEED RefSeq GRCh38/hg38
XM_017005738.2 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_047447478.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
NM_001904.4 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
NM_001098209.2 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_047447480.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49delTAPSLSGK RefSeq GRCh38/hg38
XM_024453357.1 chr3:g.41224636_41224659del24 c.124_147del24 p.T42_K49del RefSeq GRCh38/hg38

Filtering

  • Case insensitive filtering will display rows if any text in any cell matches the filter term
  • Use simple literal full or partial string matches
  • Separate multiple filter terms with a space. Any order may be used (i. e. a b c and c b a are equivalent )
  • Filtering will only apply to rows that are already loaded on the page. Filtering has no impact on query parameters.
  • Use quotes to match on a longer phrase with spaces (i.e. "mtor c1483f")

Sorting

  • Generally, the default sort order for tables is set to be first column ascending; however, specific tables may set a different default sort order.
  • Click on any column header arrows to sort by that column
  • Hold down the Shift key and click multiple columns to sort by more than one column. Be sure to set ascending or descending order for a given column before moving on to the next column.

Molecular Profile Indication/Tumor Type Response Type Therapy Name Approval Status Evidence Type Efficacy Evidence References
CTNNB1 mutant endometrial cancer predicted - sensitive Cabozantinib Case Reports/Case Series Actionable In a Phase II (NCI9322/PHL86) trial, Cometriq (Cabometyx, cabozantinib) treatment resulted in a response rate of 40% (4/10) and a 12-week progression-free survival rate of 70% (7/10) in patients with endometrial cancer harboring CTNNB1 mutations, with a median PFS of 7.6 months (PMID: 31992589; NCT01935934). 31992589
CTNNB1 mutant hepatocellular carcinoma sensitive PMED-1 Preclinical Actionable In a preclinical study, PMED-1 decreased Wnt expression and decreased proliferation of hepatocellular carcinoma cells with Ctnnb1 mutations (PMID: 24819961). 24819961
CTNNB1 mutant medulloblastoma not applicable N/A Guideline Prognostic WNT-driven medulloblastomas, characterized by CTNNB1 or APC mutations, are associated with favorable prognosis (NCCN.org). detail...
CTNNB1 mutant desmoid tumor not applicable N/A Guideline Diagnostic CTNNB1 mutations aid the diagnosis of desmoid tumor (NCCN.org). detail...
CTNNB1 mutant colorectal cancer sensitive BC21 Preclinical Actionable In a preclinical study, BC21 inhibited growth and viability of a colorectal cancer cell line with a CTNNB1 mutation and increased beta-catenin expression in culture (PMID: 22224445). 22224445
CTNNB1 mutant endometrial cancer predicted - sensitive Temsirolimus Phase II Actionable In a retrospective study of a Phase II trial, Torisel (temsirolimus) treatment resulted in an increased progression-free survival (HR 0.46) but not response rate (response difference 0.00) in advanced endometrial cancer patients harboring CTNNB1 mutations (PMID: 27016228). 27016228
CTNNB1 mutant hepatocellular carcinoma predicted - sensitive WNTinib Preclinical - Cell culture Actionable In a preclinical study, WNTinib inhibited Ezh2 phosphorylation and viability in a hepatocellular carcinoma cell line harboring a deletion of CTNNB1 exons in culture (PMID: 37537299). 37537299